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bioRxiv Genomics· Sato, K., Sun, S., Yamashita, T., Yoshida, A., Shinya, R., Sternberg, P. W., Kikuchi, T. ·· 1 day agoPickScore57

A chromosome-level genome assembly of the classical model nematode Panagrellus redivivus for comparative studies of parasitism evolution

In brief

Researchers used Oxford Nanopore long reads, Illumina short reads, and Hi-C to build a chromosome-level genome assembly of the classical model nematode Panagrellus redivivus. The assembly comprises five chromosome-scale scaffolds, with 97.1% BUSCO completeness and 17,839 predicted protein-coding genes. Comparative orthology analysis shows extensive ortholog sharing with Clade IV parasitic nematodes, providing a key non-parasitic reference genome for studying the evolution of parasitism, ovoviviparity, and gene family dynamics.

Why it matters

Chromosome-level assembly offers a non-parasitic reference for Clade IV parasitism evolution, with 97.1% completeness and 17,839 predicted genes.

Source: bioRxiv Genomics · biorxiv.org

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