bioRxiv Genomics· Sato, K., Sun, S., Yamashita, T., Yoshida, A., Shinya, R., Sternberg, P. W., Kikuchi, T. ·· 1 day agoPickScore57
A chromosome-level genome assembly of the classical model nematode Panagrellus redivivus for comparative studies of parasitism evolution
In brief
Researchers used Oxford Nanopore long reads, Illumina short reads, and Hi-C to build a chromosome-level genome assembly of the classical model nematode Panagrellus redivivus. The assembly comprises five chromosome-scale scaffolds, with 97.1% BUSCO completeness and 17,839 predicted protein-coding genes. Comparative orthology analysis shows extensive ortholog sharing with Clade IV parasitic nematodes, providing a key non-parasitic reference genome for studying the evolution of parasitism, ovoviviparity, and gene family dynamics.
Why it matters
Chromosome-level assembly offers a non-parasitic reference for Clade IV parasitism evolution, with 97.1% completeness and 17,839 predicted genes.
Source: bioRxiv Genomics · biorxiv.org
